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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22887603_22887795_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
22887603 - 22887795
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGCTTA
5'SS Class:
weak_major
3'SS Sequence:
TGCTTATGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTGTGCTTATGT
Flanking Amino Acid:
GRFLTGIKPSEFFFHCMAGR
Intron Amino Acid Position:
1112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
68.3
39.3
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
71.4
0.48
1
70
40.5
Minor 5ss
51.3
0.05
2.8
74.4
41.8
Minor BPS
49.8
0.07
2.3
75.27
47.4

Associated Gene:

Gene:
POLR1A
Ensembl Gene ID:
ENSAPLG00000013871
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014548
22870646 - 22902616
31971