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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22889364_22890696_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22889364 - 22890696
Intron Length:
1333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATGG
5'SS Class:
major
3'SS Sequence:
CTTTTATTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTCTTTTATT
Flanking Amino Acid:
KNGRDPATLQLLKMWYELDE
Intron Amino Acid Position:
1269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
63.4
43.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.9
0.87
0.7
81.1
35.5
Minor 5ss
42.9
-0.8
2.9
56.6
47.5
Minor BPS
68.7
0.67
1.6
83.34
38.2

Associated Gene:

Gene:
POLR1A
Ensembl Gene ID:
ENSAPLG00000013871
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014548
22870646 - 22902616
31971