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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22890912_22891518_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22890912 - 22891518
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGTAACT
5'SS Class:
major
3'SS Sequence:
TATTGCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTGCTTATTT
Flanking Amino Acid:
SCMQPALSSDRLKDLLYLKW
Intron Amino Acid Position:
1340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
71
39
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.8
0.72
0.9
78
36.1
Minor 5ss
34.8
-1.7
3.3
50.3
45.7
Minor BPS
61.2
0.43
2
82.08
39.9

Associated Gene:

Gene:
POLR1A
Ensembl Gene ID:
ENSAPLG00000013871
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014548
22870646 - 22902616
31971