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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22891687_22892641_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22891687 - 22892641
Intron Length:
955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CATTCTTTATTT
Flanking Amino Acid:
GEMNVTLGIPRLREILMVAS
Intron Amino Acid Position:
1396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.9
0.63
1
78.7
32.5
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
64.2
0.52
1.6
76.5
40.9

Associated Gene:

Gene:
POLR1A
Ensembl Gene ID:
ENSAPLG00000013871
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014548
22870646 - 22902616
31971