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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22893685_22894499_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22893685 - 22894499
Intron Length:
815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
TGAACTTGAACC
Flanking Amino Acid:
PRDILHFMETRFFKIVLETI
Intron Amino Acid Position:
1494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1.1
79.9
36
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
90
0.9
0.6
88.2
21.5
Minor 5ss
40.2
-1.1
2.7
50
46.3
Minor BPS
59.3
0.27
1.5
66.15
38.7

Associated Gene:

Gene:
POLR1A
Ensembl Gene ID:
ENSAPLG00000013871
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014548
22870646 - 22902616
31971