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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22896510_22896915_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22896510 - 22896915
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACAGAAAAC
Flanking Amino Acid:
FDTENELWCEVSLALPLMKV
Intron Amino Acid Position:
1666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
87.7
0.85
0.6
81.3
30.7
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
41.8
-0.6
2.5
61.64
43.2

Associated Gene:

Gene:
POLR1A
Ensembl Gene ID:
ENSAPLG00000013871
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014548
22870646 - 22902616
31971