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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22897988_22898994_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22897988 - 22898994
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGATTT
5'SS Class:
major
3'SS Sequence:
CCTGTGTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
GCTCTCACAATT
Flanking Amino Acid:
KEIKDVFAVYGIVVDPRHLS
Intron Amino Acid Position:
1772

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
74.2
37
Major BPS
72.7
0.56
1
75
30.1
Major PPT
70.9
0.47
0.9
68.5
37.3
Minor 5ss
42.6
-0.8
3.5
61.2
44.7
Minor BPS
46.8
-0.1
1.8
63.15
41

Associated Gene:

Gene:
POLR1A
Ensembl Gene ID:
ENSAPLG00000013871
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014548
22870646 - 22902616
31971