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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22899160_22901808_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22899160 - 22901808
Intron Length:
2649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATGGT
5'SS Class:
major
3'SS Sequence:
AATTCTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ACTTTCTGAATT
Flanking Amino Acid:
YKFLKEATMMGAYDELRSPS
Intron Amino Acid Position:
1827

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
69.5
41.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
72.4
0.5
0.9
66.5
39.7
Minor 5ss
33.3
-1.9
3.3
40.6
45.6
Minor BPS
67.6
0.63
1.4
78.66
37.9

Associated Gene:

Gene:
POLR1A
Ensembl Gene ID:
ENSAPLG00000013871
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014548
22870646 - 22902616
31971