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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22949761_22951032_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22949761 - 22951032
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TATTTGTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
CTTCTCCTAACC
Flanking Amino Acid:
RPIWFLKGTPKLLVLFVVGG
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
81.3
0.7
0.9
73.8
41.4
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
60.9
0.32
1.7
72.3
38.7

Associated Gene:

Gene:
ST3GAL5
Ensembl Gene ID:
ENSAPLG00000014680
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041286
22949639 - 22960509
10871
ENSAPLT00000038846
22949639 - 22960186
10548
ENSAPLT00000020983
22949639 - 22959509
9871
ENSAPLT00000015313
22949639 - 22961854
12216