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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22951148_22953410_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22951148 - 22953410
Intron Length:
2263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTGGTATT
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
GCTTTCCTAACA
Flanking Amino Acid:
TPYVDLDRVRRAQQYASAVL
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.3
73.9
42.7
Major BPS
71.6
0.54
1
72
33.1
Major PPT
86.6
0.82
0.7
85.5
29.2
Minor 5ss
36.2
-1.6
3
44.1
43.3
Minor BPS
63.8
0.43
1.7
72.44
39.4

Associated Gene:

Gene:
ST3GAL5
Ensembl Gene ID:
ENSAPLG00000014680
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038846
22949639 - 22960186
10548
ENSAPLT00000020983
22949639 - 22959509
9871
ENSAPLT00000015313
22949639 - 22961854
12216
ENSAPLT00000041286
22949639 - 22960509
10871