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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22953590_22953691_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22953590 - 22953691
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCTTTGA
5'SS Class:
major
3'SS Sequence:
TTGTTGTTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
AACACTGTAAAC
Flanking Amino Acid:
FKYGPPFGFHSGGILYGSEL
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.3
60.1
41.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
75.8
0.58
1.1
72.9
42.2
Minor 5ss
34.9
-1.7
2.8
42.7
43.9
Minor BPS
44.7
-0.4
2
51.75
39.1

Associated Gene:

Gene:
ST3GAL5
Ensembl Gene ID:
ENSAPLG00000014680
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020983
22949639 - 22959509
9871