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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22953755_22955129_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22953755 - 22955129
Intron Length:
1375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTCTCTCAACC
Flanking Amino Acid:
HLLNQFDIVIRLNDAPVQGY
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
86
0.81
0.8
88.9
28.2
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
70
0.61
1.5
80.1
34.3

Associated Gene:

Gene:
ST3GAL5
Ensembl Gene ID:
ENSAPLG00000014680
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038846
22949639 - 22960186
10548
ENSAPLT00000020983
22949639 - 22959509
9871
ENSAPLT00000015313
22949639 - 22961854
12216
ENSAPLT00000041286
22949639 - 22960509
10871