Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22955317_22957810_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22955317 - 22957810

Intron Length:

2494

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTATGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCTCTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGGTCAA

U12 Branch Point Sequence:

GTTTGGTCAACT

Flanking Amino Acid:

LQAMVKNETLSLWIRLFFWK

Intron Amino Acid Position:

231

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

77.7

31.7

Major BPS

60.5

0.26

1.3

63.4

44.3

Major PPT

84.6

0.78

0.6

84.8

22.9

Minor 5ss

41.3

-1

2.5

47.2

43.7

Minor BPS

48.2

-0

2.6

76.98

45.2

Associated Gene:

Gene:

ST3GAL5

Ensembl Gene ID:

ENSAPLG00000014680

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015313

22949639 - 22961854

12216

ENSAPLT00000041286

22949639 - 22960509

10871

ENSAPLT00000038846

22949639 - 22960186

10548

ENSAPLT00000020983

22949639 - 22959509

9871