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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22957970_22959245_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22957970 - 22959245
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTACTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
CCCTCTGTACTT
Flanking Amino Acid:
PRSIFWGWDKNVPTIGVMAV
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
76.2
0.59
0.9
73.6
36.6
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
44.2
-0.3
2.2
57.98
46.4

Associated Gene:

Gene:
ST3GAL5
Ensembl Gene ID:
ENSAPLG00000014680
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038846
22949639 - 22960186
10548
ENSAPLT00000020983
22949639 - 22959509
9871
ENSAPLT00000015313
22949639 - 22961854
12216
ENSAPLT00000041286
22949639 - 22960509
10871