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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22960067_22961839_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22960067 - 22961839
Intron Length:
1773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAA
U12 Branch Point Sequence:
TCGTGATAAAAC
Flanking Amino Acid:
KRNCCGNNCQCLWH*
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
63.5
0.33
1.2
64.3
39.6
Major PPT
89
0.88
0.7
88.9
28.2
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
41.7
-0.6
2.2
52.2
45

Associated Gene:

Gene:
ST3GAL5
Ensembl Gene ID:
ENSAPLG00000014680
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015313
22949639 - 22961854
12216