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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23011523_23019040_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23011523 - 23019040
Intron Length:
7518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CTGTTCTGACGA
Flanking Amino Acid:
QAEGRSKKRKE*
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
80.1
28.4
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
91.8
0.94
0.6
84.7
30.2
Minor 5ss
46.6
-0.3
2.5
60.6
44.5
Minor BPS
45
-0.3
2
54.88
44.4

Associated Gene:

Gene:
ATOH8
Ensembl Gene ID:
ENSAPLG00000022131
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037421
23010793 - 23030541
19749