About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23153900_23198586_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23153900 - 23198586
Intron Length:
44687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCGTAT
5'SS Class:
major
3'SS Sequence:
TGTTCTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
AAAACACTAACG
Flanking Amino Acid:
TARGKLTTWTGPPRIADKVI
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.2
0.33
1.2
62.8
40
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
81.6
0.71
0.7
81
31
Minor 5ss
37.4
-1.4
3.5
55.1
49.1
Minor BPS
45.9
-0.4
2
51.61
41.5

Associated Gene:

Gene:
FGFRL1
Ensembl Gene ID:
ENSAPLG00000014983
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015619
23153854 - 23285213
131360