About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23210900_23272500_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23210900 - 23272500
Intron Length:
61601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACCTTCCTAACA
Flanking Amino Acid:
FLLQPQVQTTDDTSSGKNSQ
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.7
40.2
Major BPS
100
1.24
0.5
100
0
Major PPT
87
0.83
0.7
81.4
29.7
Minor 5ss
43.4
-0.7
2.9
53
46
Minor BPS
58.3
0.26
1.7
65.71
40.9

Associated Gene:

Gene:
FGFRL1
Ensembl Gene ID:
ENSAPLG00000014983
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021252
23210590 - 23285213
74624