Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23277080_23277861_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23277080 - 23277861

Intron Length:

782

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTTTA

5'SS Class:

strong_major

3'SS Sequence:

TTGCCTTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

CTTTGCTCACCA

Flanking Amino Acid:

EILVFSLLNEAQPRFTQPAK

Intron Amino Acid Position:

162

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

1.1

84.1

30.2

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

85.2

0.79

0.8

80.4

31.6

Minor 5ss

49.3

-0

2.5

67.2

43.9

Minor BPS

48.5

-0.1

2.2

67.11

45.4

Associated Gene:

Gene:

FGFRL1

Ensembl Gene ID:

ENSAPLG00000014983

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021252

23210590 - 23285213

74624

ENSAPLT00000015619

23153854 - 23285213

131360

ENSAPLT00000048104

23198493 - 23285213

86721