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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23281812_23284803_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23281812 - 23284803
Intron Length:
2992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CCACGATGTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CCTGCCACGATG
Flanking Amino Acid:
FRSAFLTVLPDPKPPSAPVP
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
60.1
0.23
1.1
49.8
42.8
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
41.7
-0.8
1.9
43.03
43

Associated Gene:

Gene:
FGFRL1
Ensembl Gene ID:
ENSAPLG00000014983
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015619
23153854 - 23285213
131360
ENSAPLT00000048104
23198493 - 23285213
86721
ENSAPLT00000025322
23198493 - 23286672
88180
ENSAPLT00000021252
23210590 - 23285213
74624