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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23295387_23300398_R

Intron Information:

Intron Rank:
142892
Intron Class:
major
Intron Phase:
Intron Coordinates:
23295387 - 23300398
Intron Length:
5012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTTGATG
5'SS Class:
major
3'SS Sequence:
CTATTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1
64
41.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.4
0.89
0.7
88.1
28.8
Minor 5ss
36.6
-1.5
3.2
47.9
47.8
Minor BPS
54.8
0.23
1.9
79.65
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024193
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039541
23295311 - 23310710
15400