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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23300618_23305735_R

Intron Information:

Intron Rank:
142893
Intron Class:
major
Intron Phase:
Intron Coordinates:
23300618 - 23305735
Intron Length:
5118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GTATTTATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.2
30.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.8
0.67
0.9
73.5
40.5
Minor 5ss
36.9
-1.5
3.2
48.5
47.7
Minor BPS
55
0.15
1.7
67.71
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024193
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039541
23295311 - 23310710
15400