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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23305872_23310510_R

Intron Information:

Intron Rank:
142894
Intron Class:
major
Intron Phase:
Intron Coordinates:
23305872 - 23310510
Intron Length:
4639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTGTGTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
79.8
35.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
88.7
0.87
0.7
81.4
36
Minor 5ss
37.9
-1.4
3
47.1
42.6
Minor BPS
45.9
-0.2
2.3
67.46
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024193
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039541
23295311 - 23310710
15400