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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23403839_23406351_F

Intron Information:

Intron Rank:
142955
Intron Class:
major
Intron Phase:
Intron Coordinates:
23403839 - 23406351
Intron Length:
2513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAAGA
5'SS Class:
major
3'SS Sequence:
GTTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
ATTTCCTCATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
67.8
39.3
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
90.8
0.92
0.7
88.9
28.1
Minor 5ss
26
-2.8
3
31.1
42.6
Minor BPS
61
0.34
1.8
74.19
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027041
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044161
23398330 - 23407311
8982
ENSAPLT00000029778
23398330 - 23408834
10505
ENSAPLT00000023560
23403648 - 23408834
5187