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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23425544_23426370_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23425544 - 23426370
Intron Length:
827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATCCATGAATT
Flanking Amino Acid:
TSSQNKAGSTRSTPVSLPHN
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
85.1
25.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
70
0.45
1
66.3
39.2
Minor 5ss
35.1
-1.7
2.7
42.4
44.3
Minor BPS
58.2
0.34
1.7
77.52
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019361
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042041
23423722 - 23432685
8964