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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23428312_23429626_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23428312 - 23429626
Intron Length:
1315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
ACTATTCATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TACGCTATAATT
Flanking Amino Acid:
IDPLPSPMRKPETGTGPIRL
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
69.6
0.44
0.9
67.2
38.8
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
53.4
0.18
1.7
69.44
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019361
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042041
23423722 - 23432685
8964