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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23430694_23431927_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23430694 - 23431927
Intron Length:
1234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCACTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTTCCTTTCACT
Flanking Amino Acid:
KATQQMHQIQCMKTPQQTTP
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.6
38.4
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
80.6
0.69
0.7
78.3
29.3
Minor 5ss
32.3
-2
3.5
44.3
45.4
Minor BPS
70.9
0.74
1.7
89.23
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019361
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042041
23423722 - 23432685
8964