Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23449990_23452314_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23449990 - 23452314

Intron Length:

2325

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGTGTA

5'SS Class:

major

3'SS Sequence:

TTTCTGTTCTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGTAAT

U12 Branch Point Sequence:

GACACAGTAATA

Flanking Amino Acid:

RLVAFAGSKLRIHLDIRVGE

Intron Amino Acid Position:

120

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.7

0.7

74.2

36.5

Major BPS

64.3

0.36

1.2

65.3

38.6

Major PPT

85.6

0.8

84.1

30.8

Minor 5ss

-1.7

3.5

45.3

45.2

Minor BPS

43.2

-0.5

2.2

51.26

40.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015003

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015637

23448785 - 23454287

5503