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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23452441_23453213_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23452441 - 23453213
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
ATCTAAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CACATCTAAATT
Flanking Amino Acid:
FVTVRTPSDEVILSKLYGPK
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
71.4
0.48
1
63.6
41
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
48.8
-0
1.7
60.66
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015003
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015637
23448785 - 23454287
5503