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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23462817_23463838_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23462817 - 23463838
Intron Length:
1022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTTTCTTTAAGG
Flanking Amino Acid:
ATIPQDTVTEITCSSPSHPA
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.8
0.72
0.9
76
37.6
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
68.6
0.45
1.7
71.8
41.3

Associated Gene:

Gene:
SPON2
Ensembl Gene ID:
ENSAPLG00000015017
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035194
23460258 - 23466086
5829
ENSAPLT00000023363
23460294 - 23482519
22226
ENSAPLT00000015658
23460294 - 23477407
17114