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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23464031_23464291_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23464031 - 23464291
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTGTTTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTTTGTTTCATT
Flanking Amino Acid:
ELEVRSRHPLVSFVVRIVPS
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76.2
32.6
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
78.1
0.63
0.9
79
34.3
Minor 5ss
37.9
-1.4
2.7
45.5
37.1
Minor BPS
57.4
0.31
2.2
82.98
39.3

Associated Gene:

Gene:
SPON2
Ensembl Gene ID:
ENSAPLG00000015017
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035194
23460258 - 23466086
5829
ENSAPLT00000023363
23460294 - 23482519
22226
ENSAPLT00000015658
23460294 - 23477407
17114