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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23465120_23465918_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
23465120 - 23465918
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTTCACGTGGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TATGTCTGACTT
Flanking Amino Acid:
PLPVLQRKYLGMENLMFVYC
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
0.9
82.4
29.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
58.3
0.19
1.2
60.2
40.4
Minor 5ss
38.1
-1.3
3
53
39
Minor BPS
49.1
0.01
1.8
69.18
42.2

Associated Gene:

Gene:
SPON2
Ensembl Gene ID:
ENSAPLG00000015017
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035194
23460258 - 23466086
5829
ENSAPLT00000015658
23460294 - 23477407
17114