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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23465983_23482504_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23465983 - 23482504
Intron Length:
16522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATAAAT
U12 Branch Point Sequence:
CAGGCATAAATA
Flanking Amino Acid:
MIRAETNSAASKSRC
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.6
37.3
Major BPS
62.2
0.3
1.1
68.9
33
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
28.5
-2.5
3.1
39.7
45.9
Minor BPS
43.9
-0.4
1.9
48.91
42.3

Associated Gene:

Gene:
SPON2
Ensembl Gene ID:
ENSAPLG00000015017
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023363
23460294 - 23482519
22226