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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23600488_23606075_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23600488 - 23606075
Intron Length:
5588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGGGTTTTAACA
Flanking Amino Acid:
VHPELNGAAYSRYPPGVVSV
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
75.3
40.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
85.6
0.8
0.7
84.2
23.8
Minor 5ss
39.7
-1.2
2.8
49.5
46.5
Minor BPS
63.1
0.41
1.4
66.94
40.1

Associated Gene:

Gene:
CTBP1
Ensembl Gene ID:
ENSAPLG00000015635
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039122
23599408 - 23743598
144191
ENSAPLT00000038570
23599408 - 23666124
66717
ENSAPLT00000033313
23599408 - 23643019
43612
ENSAPLT00000016322
23600004 - 23666124
66121