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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23606194_23609183_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23606194 - 23609183
Intron Length:
2990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTAACT
5'SS Class:
major
3'SS Sequence:
TGCTTCATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CTTGCTTCATCC
Flanking Amino Acid:
AAREIRRAITGRIPDSLKNC
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
71.2
38.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
70.4
0.46
0.9
62.7
38.4
Minor 5ss
35.1
-1.7
3.2
50.8
45.1
Minor BPS
48.4
-0.1
1.9
61.83
44.1

Associated Gene:

Gene:
CTBP1
Ensembl Gene ID:
ENSAPLG00000015635
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016322
23600004 - 23666124
66121
ENSAPLT00000039122
23599408 - 23743598
144191
ENSAPLT00000038570
23599408 - 23666124
66717
ENSAPLT00000033313
23599408 - 23643019
43612