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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23609312_23611507_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23609312 - 23611507
Intron Length:
2196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTTTTC
5'SS Class:
major
3'SS Sequence:
AATTTTCATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTAAATT
Flanking Amino Acid:
ALDVHESEPFSFSQGPLKDA
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
71.3
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
73.6
0.53
0.9
71.7
38.7
Minor 5ss
38.3
-1.3
3.1
52.7
44.5
Minor BPS
62.8
0.48
1.6
78.42
39.1

Associated Gene:

Gene:
CTBP1
Ensembl Gene ID:
ENSAPLG00000015635
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038570
23599408 - 23666124
66717
ENSAPLT00000033313
23599408 - 23643019
43612
ENSAPLT00000016322
23600004 - 23666124
66121
ENSAPLT00000039122
23599408 - 23743598
144191