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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23611639_23615629_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23611639 - 23615629
Intron Length:
3991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAATC
5'SS Class:
strong_major
3'SS Sequence:
TAACTTTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTAACT
Flanking Amino Acid:
HLINDFTIKQMRQGAFLVNT
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
80.9
31.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.8
0.45
0.9
62.5
39.2
Minor 5ss
38.1
-1.3
3
52.4
44.3
Minor BPS
83
1.11
1
92.13
30.1

Associated Gene:

Gene:
CTBP1
Ensembl Gene ID:
ENSAPLG00000015635
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033313
23599408 - 23643019
43612
ENSAPLT00000016322
23600004 - 23666124
66121
ENSAPLT00000039122
23599408 - 23743598
144191
ENSAPLT00000038570
23599408 - 23666124
66717