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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23626544_23637520_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23626544 - 23637520
Intron Length:
10977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTACTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTTCTTCCATT
Flanking Amino Acid:
AQSTQEIHEKVLNEAVGALM
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
79.7
29.1
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
80.5
0.69
0.8
75.2
34.1
Minor 5ss
41.6
-0.9
3.1
56.5
47.5
Minor BPS
59.7
0.39
2
83.73
37.9

Associated Gene:

Gene:
CTBP1
Ensembl Gene ID:
ENSAPLG00000015635
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033313
23599408 - 23643019
43612
ENSAPLT00000016322
23600004 - 23666124
66121
ENSAPLT00000039122
23599408 - 23743598
144191
ENSAPLT00000038570
23599408 - 23666124
66717