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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23637676_23743591_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23637676 - 23743591
Intron Length:
105916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
TGTTTCTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGTTTCTTCATA
Flanking Amino Acid:
MQGIRPPIMNGP
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.9
0.69
0.8
76.6
32.2
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
64.7
0.46
1.7
75.34
36.5

Associated Gene:

Gene:
CTBP1
Ensembl Gene ID:
ENSAPLG00000015635
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039122
23599408 - 23743598
144191