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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23848067_23851703_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23848067 - 23851703
Intron Length:
3637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TCCTGTTTAATT
Flanking Amino Acid:
VEKLSVLKRKAVESIQAEDE
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
86.7
0.82
0.7
85.6
28.6
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
61.7
0.44
1.8
74.65
43.4

Associated Gene:

Gene:
MAEA
Ensembl Gene ID:
ENSAPLG00000015852
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016552
23832468 - 23881707
49240
ENSAPLT00000041618
23832468 - 23881287
48820
ENSAPLT00000033896
23832468 - 23880444
47977