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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23866160_23866932_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23866160 - 23866932
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTCACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
TTCTGTGTCACT
Flanking Amino Acid:
DNKSRLRKMKGCQDENELKM
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
68.6
0.42
1
66
40
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
44
-0.3
2.6
70.57
47

Associated Gene:

Gene:
MAEA
Ensembl Gene ID:
ENSAPLG00000015852
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033896
23832468 - 23880444
47977