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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23869086_23875275_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23869086 - 23875275
Intron Length:
6190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
AATTCTGTATTT
Flanking Amino Acid:
IRQNKRLDAVRHARKHFSQA
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
82.4
29.8
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
83.8
0.76
0.8
81.4
35
Minor 5ss
41.2
-1
2.9
57.1
47.2
Minor BPS
48.7
-0
2.2
71.01
40.6

Associated Gene:

Gene:
MAEA
Ensembl Gene ID:
ENSAPLG00000015852
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016552
23832468 - 23881707
49240
ENSAPLT00000041618
23832468 - 23881287
48820
ENSAPLT00000033896
23832468 - 23880444
47977