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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23875385_23880189_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23875385 - 23880189
Intron Length:
4805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
PSDTHISPYKDLLDPARWRM
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
79.7
29.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
41.6
-0.9
3.1
56.5
47.5
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
MAEA
Ensembl Gene ID:
ENSAPLG00000015852
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041618
23832468 - 23881287
48820
ENSAPLT00000033896
23832468 - 23880444
47977
ENSAPLT00000016552
23832468 - 23881707
49240