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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23898507_23898604_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23898507 - 23898604
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGAGCC
5'SS Class:
major
3'SS Sequence:
CCCCTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TATGTGGTAATT
Flanking Amino Acid:
GRLKELKKICKSSDDHIGHA
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
63.1
36.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
82
0.72
0.7
79.3
26.2
Minor 5ss
32
-2.1
3.6
42.4
38.8
Minor BPS
44
-0.3
2.6
67.77
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015894
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043979
23898409 - 23949564
51156