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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23906944_23921679_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
23906944 - 23921679
Intron Length:
14736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AAAAAATCTGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TCACATTTAAAA
Flanking Amino Acid:
MNICFKERKVMKASDDDDDD
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
54.4
0.1
1
45.3
41.2
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
51.1
0.03
1.6
60.1
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015894
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043979
23898409 - 23949564
51156
ENSAPLT00000016585
23885533 - 23949564
64032