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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2393984_2439937_F

Intron Information:

Intron Rank:
128430
Intron Class:
major
Intron Phase:
Intron Coordinates:
2393984 - 2439937
Intron Length:
45954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTGCCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
82.4
29.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
84.5
0.78
0.8
80.4
31.5
Minor 5ss
41.2
-1
2.9
57.1
47.2
Minor BPS
61.9
0.45
1.6
76.92
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019157
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048286
2392790 - 2478129
85340
ENSAPLT00000031110
2392790 - 2441286
48497