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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_23960651_23963848_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23960651 - 23963848
Intron Length:
3198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
CCCTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAC
U12 Branch Point Sequence:
GAGACCTAACCC
Flanking Amino Acid:
DACKKSAELIKEDGELYKAE
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
63.2
0.33
1
63.6
30.5
Major PPT
81
0.7
0.8
75.3
33.1
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
46
-0.3
2
52.97
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021364
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047184
23960322 - 23964323
4002