Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24112849_24120076_F

Intron Information:

Intron Rank:

128447

Intron Class:

major

Intron Phase:

Intron Coordinates:

24112849 - 24120076

Intron Length:

7228

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTAAGTGAT

5'SS Class:

major

3'SS Sequence:

GTGTTTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

AAATCCCTGATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

75.5

34.3

Major BPS

70.8

0.52

70.6

31.6

Major PPT

86.5

0.82

0.8

84.6

Minor 5ss

36.5

-1.5

3.4

54.7

43.6

Minor BPS

0.15

1.6

63.22

36.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019172

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028976

24029808 - 24120337

90530

ENSAPLT00000022197

24029808 - 24120261

90454