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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24199153_24214615_R

Intron Information:

Intron Rank:
151976
Intron Class:
major
Intron Phase:
Intron Coordinates:
24199153 - 24214615
Intron Length:
15463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTCTTTTTAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
89.8
0.89
0.7
84.7
30.1
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
59.7
0.28
1.6
65.82
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029326
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021288
24198122 - 24214938
16817