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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_24221395_24221995_R

Intron Information:

Intron Rank:
151972
Intron Class:
major
Intron Phase:
Intron Coordinates:
24221395 - 24221995
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGAATG
5'SS Class:
major
3'SS Sequence:
CTGTCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
ATTTCCTTCAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
71.5
40.2
Major BPS
71.2
0.53
1
61
37.5
Major PPT
80.8
0.69
0.8
76
32.6
Minor 5ss
30.2
-2.3
3.2
39
46.4
Minor BPS
66
0.59
2
86.17
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029326
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020489
24194528 - 24222080
27553